OLYMPUS TECHNOZONE Vol.54 2002-08

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DNA computers - general-purpose systems with the potential
to excel where electronic computers fail

Sumio Kawai Analysis of Gene Expression by a DNA Computer
Sumio Kawai
Analysis of Gene Expression by a DNA Computer
The target gene is replaced with an artificially designed DNA molecule (internal code: DCN). This ensures fast and accurate reactions.
(Click on image to expand it)
Sumio Kawai
Karaki: 
In media interviews, I am sometimes asked if the system is really a DNA computer or just a biochemical reaction system.

Suyama: 
The system carries out calculations using reactions in DNA molecules, so it is indeed a reaction system. The real questions are what kind of reactions are involved, how they are implemented, and what they are all about. Basically, we choose specific reactions and use a program to control the order in which to trigger them. By modifying the program, we can carry out not just a single computation process, but many different kinds. This general-purpose quality is the key criterion for determining whether or not a system can be described as a computer.

Karaki: 
We want to produce data that will help demonstrate the general-purpose nature of this system as quickly as possible.

Makino: 
People have asked me if the DNA computer can only be used to analyze DNA. They want to know what specific, meaningful problems can be solved using the DNA computer. I have also been asked about the future of the DNA computer. Will the system's hardware always be as big as it is now? If the size can be reduced, what will the system be used for?

Suyama: 
DNA computers are unlikely to be able to solve practical problems better than electronic computers. If we can design molecules that are more suitable for molecular computing than DNA molecule, we may be able to execute calculations faster and more quickly. However, this is not a simple thing that we are likely to achieve over a five- or ten-year time span, if someday people want to see a DNA computer that can perform the same tasks as an electronic computer more efficiently. Even electronic computers cannot do everything, and in some senses their capabilities are limited. I think that DNA computers should be used for tasks that are fundamentally unsuitable for electronic computers, especially tasks that we human beings hope to be able to perform more effectively.

Electronic computers use electronic circuits to perform calculations. Because the DNA computer uses molecular reactions, it is best suited for problems that require direct processing of molecules. The problems that will be of vital importance to us in the future relate to biotechnology and nanotechnology (*5). The ability to process molecules directly will be extremely useful in solving these problems. I have approached DNA computing from a biotechnology perspective.
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